The tumor microenvironment (TME) plays a crucial role in cancer progression and therapy resistance. Recent studies have highlighted the impact of bile acids on cancer-associated fibroblasts (CAFs) in cholangiocarcinoma, where excessive bile acids activate GPBAR1 on CAFs, leading to the secretion of CXCL10. This process enhances epithelial-mesenchymal transition (EMT) and metastasis of cholangiocarcinoma cells while creating an immunosuppressive TME by recruiting neutrophils (ref: Huang doi.org/10.1016/j.ccell.2025.05.017/). In ovarian cancer, spatial proteo-transcriptomic profiling has revealed the molecular landscape of borderline ovarian tumors, elucidating the transition from non-invasive serous borderline tumors to low-grade serous cancer and its metastases, thus providing insights into the TME's role in tumor progression (ref: Schweizer doi.org/10.1016/j.ccell.2025.06.004/). Furthermore, multi-omic analyses of gallbladder cancer have identified distinct tumor microenvironments associated with disease progression, revealing spatial-temporal characterizations of cellular compositions that stratify clinical outcomes (ref: Zhou doi.org/10.1038/s41588-025-02236-9/). These findings underscore the complexity of the TME and its influence on tumor behavior and therapeutic responses.