Spatial transcriptomics (ST) has emerged as a transformative technique in understanding the complex architecture of gliomas, particularly glioblastoma. A study by Mathur and colleagues reconstructed a 3D genomic, epigenomic, and transcriptomic spatial cartograph of glioblastoma, revealing that tumors are not merely chaotic aggregates of mutated cells but exhibit intricate organizational principles. This 'whole-tumor' perspective highlighted patterns of clonal expansion that align with neurodevelopmental hierarchies, suggesting that the spatial arrangement of cells plays a crucial role in tumor behavior and progression (ref: Baig doi.org/10.1016/j.cell.2023.12.021/). Furthermore, Song et al. introduced an innovative method that integrates ST with histopathological image data, enhancing the analysis of spatial heterogeneity in aggressive cancers like glioblastoma. This approach allows for a more nuanced understanding of the biological significance of morphological features, which are often overlooked in traditional gene expression analyses, thereby providing a more comprehensive view of tumor biology (ref: Song null).