Recent research has significantly advanced our understanding of the mechanisms and biomarkers associated with Alzheimer's disease (AD). A study by Guo et al. highlights the role of apolipoprotein E (ApoE) isoforms in AD pathology, demonstrating that impaired interactions between lipidated ApoE2 and low-density lipoprotein receptors (LDLR) confer protection against neurodegeneration linked to cholesteryl esters (CEs) (ref: Guo doi.org/10.1016/j.cell.2024.10.027/). This research reveals an allelic series where ApoE4 is associated with greater lipofuscinosis, a lysosomal pathology, compared to ApoE3 and ApoE2. Complementing this, Western et al. conducted a proteogenomic analysis of cerebrospinal fluid (CSF) that identified 6,361 proteins across 3,506 samples, providing a comprehensive atlas that integrates quantitative trait loci (QTLs) with genome-wide association studies (GWASs) to prioritize candidate genes relevant to AD (ref: Western doi.org/10.1038/s41588-024-01972-8/). Wang et al. further contributed to this theme by identifying 205 independent associations for CSF metabolites, revealing new genetic signals that could inform on metabolic disturbances in AD (ref: Wang doi.org/10.1038/s41588-024-01973-7/). Together, these studies underscore the intricate interplay between genetic factors, lipid metabolism, and neurodegenerative processes in AD, while also highlighting the potential for novel biomarkers derived from CSF analysis. In addition to genetic and metabolic insights, the role of gut microbiota in AD pathology has been explored. Zha et al. identified a gut-brain axis where microbiota-derived lysophosphatidylcholine alleviates AD pathology by suppressing ferroptosis, suggesting that microbial composition could influence neurodegeneration (ref: Zha doi.org/10.1016/j.cmet.2024.10.006/). This finding opens avenues for therapeutic strategies targeting the microbiome to mitigate AD symptoms. Furthermore, Blankenship et al. investigated the hyperexcitability of VTA dopamine neurons in a 3xTg-AD mouse model, linking neuropsychiatric symptoms in AD to dysfunction in reward-based learning (ref: Blankenship doi.org/10.1038/s41467-024-53891-1/). Collectively, these studies illustrate a multifaceted approach to understanding AD, integrating genetic, metabolic, and environmental factors that contribute to its complex pathology.