Microglia, the resident immune cells of the brain, play a crucial role in the pathogenesis of Alzheimer's disease (AD). Recent studies have highlighted the importance of the microglial transcriptome in understanding genetic risks associated with AD. For instance, Lopes et al. conducted a comprehensive analysis of 255 primary human microglial samples, revealing significant variations in gene expression across different brain regions and in relation to aging and disease pathologies (ref: Lopes doi.org/10.1038/s41588-021-00976-y/). This study underscores the potential of microglial gene expression profiles as biomarkers for AD risk. Additionally, the work by Qureshi et al. demonstrated that the neuronal retromer regulates both neuronal and microglial phenotypes in AD, linking endosomal trafficking disruptions to microglial morphology changes, which are characteristic of AD pathology (ref: Qureshi doi.org/10.1016/j.celrep.2021.110262/). These findings collectively suggest that microglial dysfunction is intricately tied to the progression of AD, highlighting the need for targeted therapeutic strategies that address microglial health. Moreover, the role of microglia in AD extends to their interaction with other cell types and the extracellular environment. Cakir et al. developed human cortical organoids to study microglial functions in health and disease, providing a novel model for investigating microglial roles in neurodevelopmental and neurodegenerative disorders (ref: Cakir doi.org/10.1038/s41467-022-28043-y/). Furthermore, the study by You et al. identified disease-related molecules in extracellular vesicles from activated astrocytes, suggesting that microglial interactions with astrocytes may influence AD progression (ref: You doi.org/10.1002/jev2.12183/). Together, these studies emphasize the multifaceted roles of microglia in AD, from their genetic underpinnings to their interactions with other glial cells, paving the way for future research focused on microglial-targeted therapies.